<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Publications on</title><link>/research-portfolio/publications/</link><description>Recent content in Publications on</description><generator>Hugo -- gohugo.io</generator><language>en</language><managingEditor>jarrod.jukebox308@slmail.me (Jarrod J Scott)</managingEditor><webMaster>jarrod.jukebox308@slmail.me (Jarrod J Scott)</webMaster><copyright>© 2026 Jarrod J Scott</copyright><lastBuildDate>Fri, 01 Dec 2023 00:00:00 +0000</lastBuildDate><atom:link href="/research-portfolio/publications/index.xml" rel="self" type="application/rss+xml"/><item><title>Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems.</title><link>/research-portfolio/publications/weinheimer-contrasting-2023/</link><pubDate>Fri, 01 Dec 2023 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/weinheimer-contrasting-2023/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/weinheimer-contrasting-2023/featured.png"/></item><item><title>Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt.</title><link>/research-portfolio/publications/nottingham-microbial-2022/</link><pubDate>Sat, 01 Oct 2022 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/nottingham-microbial-2022/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/nottingham-microbial-2022/featured.png"/></item><item><title>The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs.</title><link>/research-portfolio/publications/clever-gut-2022/</link><pubDate>Fri, 01 Jul 2022 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/clever-gut-2022/</guid><description/></item><item><title>Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef.</title><link>/research-portfolio/publications/johnson-rapid-2021/</link><pubDate>Thu, 01 Jul 2021 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/johnson-rapid-2021/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/johnson-rapid-2021/featured.png"/></item><item><title>Community-led, integrated, reproducible multi-omics with anvi'o.</title><link>/research-portfolio/publications/eren-community-led-2021/</link><pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/eren-community-led-2021/</guid><description/></item><item><title>Intestinal microbes: an axis of functional diversity among large marine consumers.</title><link>/research-portfolio/publications/scott-intestinal-2020/</link><pubDate>Wed, 01 Apr 2020 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-intestinal-2020/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/scott-intestinal-2020/featured.png"/></item><item><title>A genus definition for bacteria and archaea based on a standard genome relatedness index</title><link>/research-portfolio/publications/barco-genus-2020/</link><pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/barco-genus-2020/</guid><description/></item><item><title>Biological rejuvenation of iron oxides in bioturbated marine sediments.</title><link>/research-portfolio/publications/beam-biological-2018/</link><pubDate>Tue, 01 May 2018 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/beam-biological-2018/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/beam-biological-2018/featured.png"/></item><item><title>Biogeography of mutualistic fungi cultivated by leafcutter ants.</title><link>/research-portfolio/publications/mueller-biogeography-2017/</link><pubDate>Fri, 01 Dec 2017 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/mueller-biogeography-2017/</guid><description/></item><item><title>Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.</title><link>/research-portfolio/publications/mori-physiological-2017/</link><pubDate>Wed, 01 Nov 2017 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/mori-physiological-2017/</guid><description/></item><item><title>In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Lō'ihi Seamount.</title><link>/research-portfolio/publications/emerson-situ-2017/</link><pubDate>Sat, 27 May 2017 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/emerson-situ-2017/</guid><description/></item><item><title>Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount.</title><link>/research-portfolio/publications/scott-bringing-2017/</link><pubDate>Sun, 01 Jan 2017 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-bringing-2017/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/scott-bringing-2017/featured.png"/></item><item><title>Exploring the "Sharkcano": Biogeochemical observations of the Kavachi Submarine Volcano (Solomon Islands)</title><link>/research-portfolio/publications/phillips-exploring-2016/</link><pubDate>Fri, 01 Jan 2016 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/phillips-exploring-2016/</guid><description/></item><item><title>Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.</title><link>/research-portfolio/publications/emerson-microbial-2015/</link><pubDate>Tue, 01 Dec 2015 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/emerson-microbial-2015/</guid><description/></item><item><title>Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.</title><link>/research-portfolio/publications/sanders-baleen-2015/</link><pubDate>Tue, 22 Sep 2015 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/sanders-baleen-2015/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/sanders-baleen-2015/featured.jpg"/></item><item><title>Correction: Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.</title><link>/research-portfolio/publications/grubbs-correction-2015/</link><pubDate>Tue, 14 Jul 2015 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/grubbs-correction-2015/</guid><description/></item><item><title>Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.</title><link>/research-portfolio/publications/grubbs-unique-2015/</link><pubDate>Tue, 07 Apr 2015 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/grubbs-unique-2015/</guid><description/></item><item><title>Microbial iron mats at the Mid-Atlantic Ridge and evidence that Zetaproteobacteria may be restricted to iron-oxidizing marine systems.</title><link>/research-portfolio/publications/scott-microbial-2015/</link><pubDate>Thu, 01 Jan 2015 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-microbial-2015/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/scott-microbial-2015/featured.jpg"/></item><item><title>Convergent bacterial microbiotas in the fungal agricultural systems of insects.</title><link>/research-portfolio/publications/aylward-convergent-2014/</link><pubDate>Sat, 01 Nov 2014 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/aylward-convergent-2014/</guid><description/></item><item><title>Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria from fresh water wetlands to hydrothermal vent sites</title><link>/research-portfolio/publications/macdonald-using-2014/</link><pubDate>Thu, 12 Jun 2014 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/macdonald-using-2014/</guid><description/></item><item><title>A phylogenetic analysis of the phylum Fibrobacteres.</title><link>/research-portfolio/publications/jewell-phylogenetic-2013/</link><pubDate>Sun, 01 Sep 2013 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/jewell-phylogenetic-2013/</guid><description/></item><item><title>Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.</title><link>/research-portfolio/publications/aylward-leucoagaricus-2013/</link><pubDate>Sat, 01 Jun 2013 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/aylward-leucoagaricus-2013/</guid><description/></item><item><title>Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.</title><link>/research-portfolio/publications/aylward-metagenomic-2012/</link><pubDate>Sat, 01 Sep 2012 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/aylward-metagenomic-2012/</guid><description/></item><item><title>The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.</title><link>/research-portfolio/publications/suen-genome-2011/</link><pubDate>Tue, 01 Feb 2011 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/suen-genome-2011/</guid><description/></item><item><title>The Microbiome of Leaf-Cutter Ant Fungus Gardens</title><link>/research-portfolio/publications/suen-microbiome-2011/</link><pubDate>Sat, 01 Jan 2011 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/suen-microbiome-2011/</guid><description>&lt;p&gt;Add the &lt;strong&gt;full text&lt;/strong&gt; or &lt;strong&gt;supplementary notes&lt;/strong&gt; for the publication here using Markdown formatting.&lt;/p&gt;</description></item><item><title>An insect herbivore microbiome with high plant biomass-degrading capacity.</title><link>/research-portfolio/publications/suen-insect-2010/</link><pubDate>Wed, 01 Sep 2010 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/suen-insect-2010/</guid><description/></item><item><title>Monoculture of leafcutter ant gardens.</title><link>/research-portfolio/publications/mueller-monoculture-2010/</link><pubDate>Wed, 01 Sep 2010 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/mueller-monoculture-2010/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/mueller-monoculture-2010/featured.jpg"/></item><item><title>Microbial community structure of leaf-cutter ant fungus gardens and refuse dumps.</title><link>/research-portfolio/publications/scott-microbial-2010/</link><pubDate>Mon, 01 Mar 2010 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-microbial-2010/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/scott-microbial-2010/featured.png"/></item><item><title>Bionectriol A, a polyketide glycoside from the fungus Bionectria sp. associated with the fungus-growing ant, Apterostigma dentigerum.</title><link>/research-portfolio/publications/freinkman-bionectriol-2009/</link><pubDate>Tue, 01 Dec 2009 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/freinkman-bionectriol-2009/</guid><description/></item><item><title>Polymorphic microsatellite markers for the symbiotic fungi cultivated by leaf cutter ants (Attini, Formicidae).</title><link>/research-portfolio/publications/scott-polymorphic-2009/</link><pubDate>Tue, 01 Sep 2009 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-polymorphic-2009/</guid><description/></item><item><title>Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp.</title><link>/research-portfolio/publications/oh-mycangimycin-2009/</link><pubDate>Sun, 01 Feb 2009 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/oh-mycangimycin-2009/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/oh-mycangimycin-2009/featured.png"/></item><item><title>Bacterial protection of beetle-fungus mutualism.</title><link>/research-portfolio/publications/scott-bacterial-2008/</link><pubDate>Wed, 01 Oct 2008 00:00:00 +0000</pubDate><author>jarrod.jukebox308@slmail.me (Jarrod J Scott)</author><guid>/research-portfolio/publications/scott-bacterial-2008/</guid><description/><media:content xmlns:media="http://search.yahoo.com/mrss/" url="/research-portfolio/publications/scott-bacterial-2008/featured.jpg"/></item></channel></rss>