Publications
A complete list of my peer-reviewed publications.
2023
- Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems. Alaina R. Weinheimer Corresponding Author , Frank O. Aylward, Matthieu Leray, and Jarrod J. Scott Corresponding Author . ISME Communications, 3: e127. 2023.
2022
- Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt. Andrew T. Nottingham, Jarrod J. Scott, Kristin Saltonstall, Kirk Broders, Maria Montero-Sanchez, Johann Püspök, Erland Bååth, and Patrick Meir. Nature Microbiology, 7: 1650--1660. 2022.
- The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs. Friederike Clever, Jade M. Sourisse, Richard F. Preziosi, Jonathan A. Eisen, E. Catalina Rodriguez Guerra, Jarrod J. Scott, Laetitia G. E. Wilkins, Andrew H. Altieri, W. Owen McMillan, and Matthieu Leray. Communications Biology, 5: 1650–1660. 2022.
2021
- Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef. Maggie D. Johnson Equal Contribution , Jarrod J. Scott Equal Contribution , Matthieu Leray Equal Contribution , Noelle Lucey Equal Contribution , Lucia M. Rodriguez Bravo, William L. Wied, and Andrew H. Altieri. Nature Communications, 12: e4522. 2021.
- Community-led, integrated, reproducible multi-omics with anvi'o. A. Murat Eren, Evan Kiefl, Alon Shaiber, Iva Veseli, Samuel E. Miller, Matthew S. Schechter, Isaac Fink, Jessica N. Pan, Mahmoud Yousef, Emily C. Fogarty, Florian Trigodet, Andrea R. Watson, Özcan C. Esen, Ryan M. Moore, Quentin Clayssen, Michael D. Lee, Veronika Kivenson, Elaina D. Graham, Bryan D. Merrill, Antti Karkman, Daniel Blankenberg, John M. Eppley, Andreas Sjödin, Jarrod J. Scott, Xabier Vázquez-Campos, Luke J. McKay, Elizabeth A. McDaniel, Sarah L. R. Stevens, Rika E. Anderson, Jessika Fuessel, Antonio Fernandez-Guerra, Lois Maignien, Tom O. Delmont, and Amy D. Willis. Nature Microbiology, 6: 3--6. 2021.
2020
- Intestinal microbes: an axis of functional diversity among large marine consumers. Jarrod J. Scott Corresponding Author , Thomas C. Adam, Alain Duran, Deron E. Burkepile, and Douglas B. Rasher Corresponding Author . Proceedings of the Royal Society B: Biological Sciences, 287: e20192367. 2020.
- A genus definition for bacteria and archaea based on a standard genome relatedness index Roman A. Barco, George M. Garrity, Jarrod J. Scott, J. P. Amend, Kenneth H. Nealson, and David Emerson. mBio, 11: e02475-19. 2020.
2018
- Biological rejuvenation of iron oxides in bioturbated marine sediments. Jacob P. Beam, Jarrod J. Scott, Sean M. McAllister, Clara S. Chan, James McManus, Filip J. R. Meysman, and David Emerson. The ISME Journal, 12: 1389--1394. 2018.
2017
- Biogeography of mutualistic fungi cultivated by leafcutter ants. Ulrich G. Mueller, Heather D. Ishak, Sofia M. Bruschi, Chad C. Smith, Jacob J. Herman, Scott E. Solomon, Alexander S. Mikheyev, Christian Rabeling, Jarrod J. Scott, Michael Cooper, Andre Rodrigues, Adriana Ortiz, Carlos R. F. Brandão, John E. Lattke, Fernando C. Pagnocca, Stephen A. Rehner, Ted R. Schultz, Heraldo L. Vasconcelos, Rachelle M. M. Adams, Martin Bollazzi, Rebecca M. Clark, Anna G. Himler, John S. LaPolla, Inara R. Leal, Robert A. Johnson, Flavio Roces, Jeffrey Sosa-Calvo, Rainer Wirth, and Maurício Jr Bacci. Molecular Ecology, 26: 6921--6937. 2017.
- Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov. Jiro F. Mori, Jarrod J. Scott, Kevin W. Hager, Craig L. Moyer, Kirsten Küsel, and David Emerson. The ISME Journal, 11: 2624--2636. 2017.
- In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Lō'ihi Seamount. David Emerson, Jarrod J. Scott, Anna Leavitt, Emily Fleming, and Craig Moyer. Deep Sea Research Part I: Oceanographic Research Papers, 126: 31--39. 2017.
- Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount. Jarrod J. Scott Corresponding Author , Brian T. Glazer, and David Emerson. Environmental Microbiology, 19: 301--316. 2017.
2016
- Exploring the "Sharkcano": Biogeochemical observations of the Kavachi Submarine Volcano (Solomon Islands) Brennan T. Phillips, Matthew Dunbabin, Brad Henning, Corey Howell, Alex DeCiccio, Ashton Flinders, Katherine A. Kelley, Jarrod J. Scott, Simon Albert, Steven Carey, Rami Tsadok, and Alistair Grinham. Oceanography, 29: 160--169. 2016.
2015
- Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling. David Emerson, Jarrod J. Scott, Joshua Benes, and William B. Bowden. Applied and Environmental Microbiology, 81: 8066--8075. 2015.
- Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores. Jon G. Sanders, Annabel C. Beichman, Joe Roman, Jarrod J. Scott, David Emerson, James J. McCarthy, and Peter R. Girguis. Nature Communications, 6: e8285. 2015.
- Correction: Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses. Kirk J. Grubbs, Jarrod J. Scott, Kevin J. Budsberg, Harry Read, Teri C. Balser, and Cameron R. Currie. PloS One, 10: e0133100. 2015.
- Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses. Kirk J. Grubbs Equal Contribution , Jarrod J. Scott Equal Contribution , Kevin J. Budsberg, Harry Read, Teri C. Balser, and Cameron R. Currie. PloS One, 10: e0121697. 2015.
- Microbial iron mats at the Mid-Atlantic Ridge and evidence that Zetaproteobacteria may be restricted to iron-oxidizing marine systems. Jarrod J. Scott Corresponding Author , John A. Breier, George W. Luther III, and David Emerson. PloS One, 10: e0119284. 2015.
2014
- Convergent bacterial microbiotas in the fungal agricultural systems of insects. Frank O. Aylward, Garret Suen, Peter H. W. Biedermann, Aaron S. Adams, Jarrod J. Scott, Stephanie A. Malfatti, Tijana Glavina del Rio, Susannah G. Tringe, Michael Poulsen, Kenneth F. Raffa, Kier D. Klepzig, and Cameron R. Currie. mBio, 5: e02077. 2014.
- Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria from fresh water wetlands to hydrothermal vent sites Daniel J. MacDonald, Alyssa J. Findlay, Sean M. McAllister, Josh M. Barnett, Patricia Hredzak-Showalter, Sean T. Krepski, Shane G. Cone, Jarrod J. Scott, Sarah K. Bennett, Clara S. Chan, David Emerson, and George W. Luther III. Environmental Science. Processes & Impacts, 16: 2117--2126. 2014.
2013
- A phylogenetic analysis of the phylum Fibrobacteres. Kelsea A. Jewell, Jarrod J. Scott, Sandra M. Adams, and Garret Suen. Systematic and Applied Microbiology, 36: 376--382. 2013.
- Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Frank O. Aylward, Kristin E. Burnum-Johnson, Susannah G. Tringe, Clotilde Teiling, Daniel M. Tremmel, Joseph A. Moeller, Jarrod J. Scott, Kerrie W. Barry, Paul D. Piehowski, Carrie D. Nicora, Stephanie A. Malfatti, Matthew E. Monroe, Samuel O. Purvine, Lynne A. Goodwin, Richard D. Smith, George M. Weinstock, Nicole M. Gerardo, Garret Suen, Mary S. Lipton, and Cameron R. Currie. Applied & Environmental Microbiology, 79: 3770--3778. 2013.
2012
- Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. Frank O. Aylward, Kristin E. Burnum, Jarrod J. Scott, Garret Suen, Susannah G. Tringe, Sandra M. Adams, Kerrie W. Barry, Carrie D. Nicora, Paul D. Piehowski, Samuel O. Purvine, Gabriel J. Starrett, Lynne A. Goodwin, Richard D. Smith, Mary S. Lipton, and Cameron R. Currie. The ISME Journal, 6: 1688--1701. 2012.
2011
- The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. Garret Suen, Clotilde Teiling, Lewyn Li, Carson Holt, Ehab Abouheif, Erich Bornberg-Bauer, Pascal Bouffard, Eric J. Caldera, Elizabeth Cash, Amy Cavanaugh, Olgert Denas, Eran Elhaik, Marie-Julie Favé, Jürgen Gadau, Joshua D. Gibson, Dan Graur, Kirk J. Grubbs, Darren E. Hagen, Timothy T. Harkins, Martin Helmkampf, Hao Hu, Brian R. Johnson, Jay Kim, Sarah E. Marsh, Joseph A. Moeller, Mónica C. Muñoz-Torres, Marguerite C. Murphy, Meredith C. Naughton, Surabhi Nigam, Rick Overson, Rajendhran Rajakumar, Justin T. Reese, Jarrod J. Scott, Chris R. Smith, Shu Tao, Neil D. Tsutsui, Lumi Viljakainen, Lothar Wissler, Mark D. Yandell, Fabian Zimmer, James Taylor, Steven C. Slater, Sandra W. Clifton, Wesley C. Warren, Christine G. Elsik, Christopher D. Smith, George M. Weinstock, Nicole M. Gerardo, and Cameron R. Currie. PLoS Genetics, 7: e1002007. 2011.
- The Microbiome of Leaf-Cutter Ant Fungus Gardens Garret Suen, Jarrod J. Scott, Frank O. Aylward, and Cameron R. Currie. in Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats: 367--379. 2011.
2010
- An insect herbivore microbiome with high plant biomass-degrading capacity. Garret Suen, Jarrod J. Scott, Frank O. Aylward, Sandra M. Adams, Susannah G. Tringe, Adrián A. Pinto-Tomás, Clifton E. Foster, Markus Pauly, Paul J. Weimer, Kerrie W. Barry, Lynne A. Goodwin, Pascal Bouffard, Lewyn Li, Jolene Osterberger, Timothy T. Harkins, Steven C. Slater, Timothy J. Donohue, and Cameron R. Currie. PLoS Genetics, 6: e1001129. 2010.
- Monoculture of leafcutter ant gardens. Ulrich G. Mueller, Jarrod J. Scott, Heather D. Ishak, Michael Cooper, and Andre Rodrigues. PloS One, 5: e12668. 2010.
- Microbial community structure of leaf-cutter ant fungus gardens and refuse dumps. Jarrod J. Scott, Kevin J. Budsberg, Garret Suen, Devin L. Wixon, Teri C. Balser, and Cameron R. Currie. PloS One, 5: e9922. 2010.
2009
- Bionectriol A, a polyketide glycoside from the fungus Bionectria sp. associated with the fungus-growing ant, Apterostigma dentigerum. Elizaveta Freinkman, Dong-Chan Oh, Jarrod J. Scott, Cameron R. Currie, and Jon Clardy. Tetrahedron Letters, 50: 6834--6837. 2009.
- Polymorphic microsatellite markers for the symbiotic fungi cultivated by leaf cutter ants (Attini, Formicidae). Jarrod J. Scott, Matthew K. Weskin, Michael Cooper, and Ulrich G. Mueller. Molecular Ecology Resources, 9: 1391--1394. 2009.
- Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp. Dong-Chan Oh, Jarrod J. Scott, Cameron R. Currie, and Jon Clardy. Organic Letters, 11: 633--636. 2009.
2008
- Bacterial protection of beetle-fungus mutualism. Jarrod J. Scott, Dong-Chan Oh, M. Cetin Yuceer, Kier D. Klepzig, Jon Clardy, and Cameron R. Currie. Science, 322: 63--63. 2008.