Jarrod on

A Brief Essay on the History of Microbial Science

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aenean in eleifend justo, vestibulum congue lacus. Quisque est libero, lacinia sed placerat ac, interdum id urna.

Accessible Color Palettes for Data Visualization

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

High-contrast color palettes that help make figures accessible to all types of people.

Codon Map

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Which codons specify particular amino acids? To help memorize the codon to amino acid assignment, I created a new way of visualizing these relationships.

Appointments, Education, & Training

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.

Contact Form

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Get in touch

I would love to hear from you. Please fill out the form and I will get back to you as soon as possible.

Symbiosis

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Lorem ipsum dolor sit amet consectetur adipiscing elit. Quisque faucibus ex sapien vitae pellentesque sem placerat. In id cursus mi pretium tellus duis convallis. Tempus leo eu aenean sed diam urna tempor.

Complexity

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Remember when we first started…? I’ve missed those days.

Credits

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Unless otherwise noted, all content of this website, including text and images, are my own.

Homepage
#

Banner image reproduced from The Channeled Scablands of the Columbia Plateau by J Harlen Bretz, The Journal of Geology 31, no. 8 (1923):617 - 645. This work has been marked as dedicated to the public domain.

Posts
#

Accessible Color Palettes for Data Visualization
#

Banner image generated in R using code modified from Danielle Navarro’s Linear cosine palettes post. This work is licensed under a Creative Commons BY 4.0 International License.

Reimaging Codon Maps
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Codon table provided by Scott Henry Maxwell. This work is licensed under a Creative Commons BY-NC-SA 4.0 International License.

Featured Publications

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

See all publications

Accessibility Statement

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 Sep 2026 00:00:00 +0000

(Last modified: Sep 1, 2026)

General Commitment
#

I, Jarrod J Scott, am committed to ensuring digital accessibility for all people. I am continually improving the user experience for everyone and applying the relevant accessibility standards to ensure my research, teaching materials, and blog posts are universally available.

Data Visualizations

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vivamus non magna ex. Donec sollicitudin ut lorem quis lobortis. Nam ac ipsum libero. Sed a ex eget ipsum tincidunt venenatis quis sed nisl. Pellentesque sed urna vel odio consequat tincidunt id ut purus. Nam sollicitudin est sed dui interdum rhoncus.

Ethnobotany

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Disclaimer

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 31 Aug 2026 00:00:00 +0000

(Last modified: Aug 31, 2026)

The views, thoughts, and opinions expressed on this website belong solely to the author, Jarrod J Scott, and do not necessarily reflect the official policy, position, or views of any institution or organization I happen to be affiliated with, its administration, or any funding agencies.

SciArt

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Skills & Expertise

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Expand to see Tech Stack

Tech Stack

Technologies I use to build things

Licensing & Terms of Use

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 31 Aug 2026 00:00:00 +0000

(Last modified: Aug 31, 2026)

© 2026 Jarrod J Scott. All rights reserved unless otherwise stated below. I believe in open science and the free exchange of academic knowledge. To facilitate collaboration, different materials on this website are made available under the following open-source licenses:

Web Products

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

On this page are some web-based products I made using publishing tools tools like R Markdown, Quarto, and Hugo. Included here are project websites, reproducible workflows, tutorials, and slides from talks. Each web product has a link to the corresponding code repository on GitHub just in case you want to see the code.

Privacy Policy

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 31 Aug 2026 00:00:00 +0000

(Last modified: Aug 31, 2026)

Your privacy is important to me. This Privacy Policy explains how Jarrod J. Scott or jarrodscott.github.io (“I”, “my”, or “this website”) collects, uses, and protects your personal information when you visit this site and use its contact features.

Media Features

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Fri, 01 Dec 2023 00:00:00 +0000

Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 01 Oct 2022 00:00:00 +0000

The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Fri, 01 Jul 2022 00:00:00 +0000

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Thu, 01 Jul 2021 00:00:00 +0000

Community-led, integrated, reproducible multi-omics with anvi'o.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Fri, 01 Jan 2021 00:00:00 +0000

Intestinal microbes: an axis of functional diversity among large marine consumers.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Apr 2020 00:00:00 +0000

A genus definition for bacteria and archaea based on a standard genome relatedness index

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Jan 2020 00:00:00 +0000

Biological rejuvenation of iron oxides in bioturbated marine sediments.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 May 2018 00:00:00 +0000

Biogeography of mutualistic fungi cultivated by leafcutter ants.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Fri, 01 Dec 2017 00:00:00 +0000

Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Nov 2017 00:00:00 +0000

In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Lō'ihi Seamount.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 27 May 2017 00:00:00 +0000

Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sun, 01 Jan 2017 00:00:00 +0000

Exploring the "Sharkcano": Biogeochemical observations of the Kavachi Submarine Volcano (Solomon Islands)

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Fri, 01 Jan 2016 00:00:00 +0000

Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 Dec 2015 00:00:00 +0000

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 22 Sep 2015 00:00:00 +0000

Correction: Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 14 Jul 2015 00:00:00 +0000

Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 07 Apr 2015 00:00:00 +0000

Microbial iron mats at the Mid-Atlantic Ridge and evidence that Zetaproteobacteria may be restricted to iron-oxidizing marine systems.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Thu, 01 Jan 2015 00:00:00 +0000

Convergent bacterial microbiotas in the fungal agricultural systems of insects.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 01 Nov 2014 00:00:00 +0000

Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria from fresh water wetlands to hydrothermal vent sites

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Thu, 12 Jun 2014 00:00:00 +0000

A phylogenetic analysis of the phylum Fibrobacteres.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sun, 01 Sep 2013 00:00:00 +0000

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 01 Jun 2013 00:00:00 +0000

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 01 Sep 2012 00:00:00 +0000

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 Feb 2011 00:00:00 +0000

The Microbiome of Leaf-Cutter Ant Fungus Gardens

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sat, 01 Jan 2011 00:00:00 +0000

Add the full text or supplementary notes for the publication here using Markdown formatting.

An insect herbivore microbiome with high plant biomass-degrading capacity.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Sep 2010 00:00:00 +0000

Monoculture of leafcutter ant gardens.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Sep 2010 00:00:00 +0000

Microbial community structure of leaf-cutter ant fungus gardens and refuse dumps.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Mar 2010 00:00:00 +0000

Bionectriol A, a polyketide glycoside from the fungus Bionectria sp. associated with the fungus-growing ant, Apterostigma dentigerum.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 Dec 2009 00:00:00 +0000

Polymorphic microsatellite markers for the symbiotic fungi cultivated by leaf cutter ants (Attini, Formicidae).

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Tue, 01 Sep 2009 00:00:00 +0000

Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Sun, 01 Feb 2009 00:00:00 +0000

Bacterial protection of beetle-fungus mutualism.

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Wed, 01 Oct 2008 00:00:00 +0000

Teaching Experience

jarrod.jukebox308@slmail.me (Jarrod J Scott) — Mon, 01 Jan 0001 00:00:00 +0000

Jarrod on

A Brief Essay on the History of Microbial Science

Accessible Color Palettes for Data Visualization

Codon Map

Appointments, Education, & Training

Contact Form

Get in touch

Symbiosis

Complexity

Credits

Homepage #

Posts #

Accessible Color Palettes for Data Visualization #

Reimaging Codon Maps #

Featured Publications

Accessibility Statement

General Commitment #

Data Visualizations

Ethnobotany

Disclaimer

SciArt

Skills & Expertise

Tech Stack

Licensing & Terms of Use

Web Products

Privacy Policy

Media Features

Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems.

Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt.

The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs.

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef.

Community-led, integrated, reproducible multi-omics with anvi'o.

Intestinal microbes: an axis of functional diversity among large marine consumers.

A genus definition for bacteria and archaea based on a standard genome relatedness index

Biological rejuvenation of iron oxides in bioturbated marine sediments.

Biogeography of mutualistic fungi cultivated by leafcutter ants.

Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.

In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Lō'ihi Seamount.

Bringing microbial diversity into focus: high-resolution analysis of iron mats from the Lō'ihi Seamount.

Exploring the "Sharkcano": Biogeochemical observations of the Kavachi Submarine Volcano (Solomon Islands)

Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.

Correction: Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.

Unique honey bee (Apis mellifera) hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.

Microbial iron mats at the Mid-Atlantic Ridge and evidence that Zetaproteobacteria may be restricted to iron-oxidizing marine systems.

Convergent bacterial microbiotas in the fungal agricultural systems of insects.

Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria from fresh water wetlands to hydrothermal vent sites

A phylogenetic analysis of the phylum Fibrobacteres.

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.

The Microbiome of Leaf-Cutter Ant Fungus Gardens

An insect herbivore microbiome with high plant biomass-degrading capacity.

Monoculture of leafcutter ant gardens.

Microbial community structure of leaf-cutter ant fungus gardens and refuse dumps.

Bionectriol A, a polyketide glycoside from the fungus Bionectria sp. associated with the fungus-growing ant, Apterostigma dentigerum.

Polymorphic microsatellite markers for the symbiotic fungi cultivated by leaf cutter ants (Attini, Formicidae).

Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp.

Bacterial protection of beetle-fungus mutualism.

Teaching Experience

Homepage
#

Posts
#

Accessible Color Palettes for Data Visualization
#

Reimaging Codon Maps
#

General Commitment
#